Medtr0054s0090.1

Overview


Name	Medtr0054s0090.1
Unique Name	Medtr0054s0090.1
Type	mRNA
Organism	Medicago truncatula (Barrel Medic)
Sequence length	1224

Homology

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502098693|ref|XP_004491295.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502168373|ref|XP_004514373.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502171706|ref|XP_004515087.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502099101|ref|XP_004491389.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502146119|ref|XP_004506312.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502154821|ref|XP_004509851.1| (PREDICTED: putative F-box protein At3g16210-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502089309|ref|XP_004488869.1| (PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum])

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BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502145990|ref|XP_004506271.1| (PREDICTED: F-box protein CPR30-like, partial [Cicer arietinum])

[Close]

BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502124426|ref|XP_004498525.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

[Close]

BLAST of Medtr0054s0090.1 vs. NCBI nr
Match: gi|502124436|ref|XP_004498529.1| (PREDICTED: F-box protein CPR30-like [Cicer arietinum])

The following BLAST results are available for this feature:

BLAST of Medtr0054s0090.1 vs. NCBI nr

BLAST of Medtr0054s0090.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20


Match Name	E-value	Identity	Description
gi\|502098693\|ref\|XP_004491295.1\|	1.687970e-109	47.72	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]
gi\|502168373\|ref\|XP_004514373.1\|	1.433140e-102	46.45	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]
gi\|502171706\|ref\|XP_004515087.1\|	1.697700e-102	46.82	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]
gi\|502099101\|ref\|XP_004491389.1\|	4.148020e-98	43.51	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]
gi\|502146119\|ref\|XP_004506312.1\|	5.776630e-98	46.19	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]
gi\|502154821\|ref\|XP_004509851.1\|	2.841750e-97	46.81	PREDICTED: putative F-box protein At3g16210-like [...	[more]
gi\|502089309\|ref\|XP_004488869.1\|	1.539600e-92	45.26	PREDICTED: F-box/kelch-repeat protein At3g06240-li...	[more]
gi\|502145990\|ref\|XP_004506271.1\|	1.192520e-91	47.51	PREDICTED: F-box protein CPR30-like, partial [Cice...	[more]
gi\|502124426\|ref\|XP_004498525.1\|	1.442750e-91	44.92	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]
gi\|502124436\|ref\|XP_004498529.1\|	2.746820e-91	47.52	PREDICTED: F-box protein CPR30-like [Cicer arietin...	[more]

Pages

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of M.truncatula	2014-08-19
InterPro Annotations	2014-08-26
BlastP Analysis	2014-08-26

InterPro

Analysis Name: InterPro Annotations
Date Performed: 2014-08-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	F_box_assoc_1: F-box protein interactio	coord: 120..376 score: 1.4
None	No IPR available	GENE3D	1.20.1280.50	no description	coord: 18..85 score: 0.0

Sequences

The following sequences are available for this feature:

mRNA sequence

mRNA sequence

>Medtr0054s0090.1 ID=Medtr0054s0090.1|Name=Medtr0054s0090.1|organism=Medicago truncatula|type=mRNA|length=1224bp
ATGAAGAAGAAATCAGCGGCTGCAACAAATGCAAAGGTGCACAATTATAT
ATCAGACGATATTTCCTTCACAATTCTATCCAAACTCCCTCTTAAATCTT
TGAACCGATTTCGATGCGTTCGTAAATCATGGTCACTCTTATTTGAAAAC
CAACATCTCATGAACATGATCCGCAAAAATTTCTTATGTAATTTGAATTG
TTGTTCTTATTACGACCAAGCATCTCTCCTCCTGAAATACTTGGATGAAA
CCCACAAAGATATTTTGTATTCTCTTTCTCATGAGAGGTTTGAGAATAAA
GTAAAATTAGATTGCACAAATGTAATCGATCACCTATATATTTTTCGTAT
CTTTGGTCTTGGCAGTATTAATGGCATTGTTTGTGTTCATGCAAATTGTG
GTGCAATTGTATTTTGGAACCCAGCTACCCAAGCAATAAAACTCATTCCT
CCTAGTCCTCTTGAGTTGGTTGAGTTGCCTATCCCTGGTGTTGCTAAGGA
ATTCGTTAATGTTGAAGCTTTTACTTATCTTCATGGATTTGGTTATGATA
GTGTTATAGATGACTATAAGGTTATCTGTCTTGTATCTTTTGATATCCAA
GTAGAATTGGTAGATACATTTTCAGACTCCTTATTGGAAGATATATACTT
GGATGAATTATGGGAGATATATAGCCTAAGAAGTAACTCGTGGAGGAAAC
TTGATATTGACATGCCATCTTCTTCTTACTGTATAGAGGGAACCCAAGTC
TACATGGATGGAGTGTGTCATTGGTTGTGTGAAGAGAATACCCCTGCTGG
ACCATGTTTAGTATCATTTTACTTGAGAAATGAGGTGTTCTGTATAACAC
CCATACCCTCGGATGAAGATGACTGTTTTAAATTTAAAGCTTCATCGATA
AATTTGGTGTTATTAAATGGTTCCATTTCCTTGATCGCGTTTCATCGGGA
GACTACTACTTTTGACATAGCAATTTTGGGTGAACTCGGCATTAAGGAAT
CGTGGACCAAACTCTTCACTGTTGGACCGTTGTCTTGCGTTGAGCGTCCT
ATCAGAGTGGGGACGAAAGGGGAAATTTTCTTCCAAAGGAAAGATAATGA
ATTAGCTTGGTTTGATCTAAGTACCCAAGTGATTGAAGAGCTTGGTTATA
AAGCAAGGGGTCCTTATACTCGGATATCACTATACAAGGAAAACATTCTT
GCCATTGAAGGAATAAGTAATTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017451	F-box associated interaction domain
noIPR	unintegrated