Overview
NameMedtr0052s0160.1
Unique NameMedtr0052s0160.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length474
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032774 RNA biosynthetic process
biological_process GO:0016070 RNA metabolic process
biological_process GO:0019438 aromatic compound biosynthetic process
biological_process GO:0065007 biological regulation
biological_process GO:0008150 biological_process
biological_process GO:0009058 biosynthetic process
biological_process GO:0008283 cell proliferation
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0044271 cellular nitrogen compound biosynthetic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0010467 gene expression
biological_process GO:0018130 heterocycle biosynthetic process
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:0009059 macromolecule biosynthetic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0090304 nucleic acid metabolic process
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:1901362 organic cyclic compound biosynthetic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0009303 rRNA transcription
biological_process GO:2001141 regulation of RNA biosynthetic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0050789 regulation of biological process
biological_process GO:0009889 regulation of biosynthetic process
biological_process GO:0031326 regulation of cellular biosynthetic process
biological_process GO:2000112 regulation of cellular macromolecule biosynthetic process
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0010556 regulation of macromolecule biosynthetic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0019222 regulation of metabolic process
biological_process GO:0051171 regulation of nitrogen compound metabolic process
biological_process GO:0019219 regulation of nucleobase-containing compound metabolic process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0044699 single-organism process
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0005488 binding
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0001071 nucleic acid binding transcription factor activity
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003700 sequence-specific DNA binding transcription factor activity
molecular_function GO:0043566 structure-specific DNA binding
molecular_function GO:0008134 transcription factor binding
Homology
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|502128409|ref|XP_004499953.1| (PREDICTED: uncharacterized protein LOC101515119 [Cicer arietinum] >gi|502128999|ref|XP_004500148.1| PREDICTED: uncharacterized protein LOC101513061 [Cicer arietinum] >gi|502180938|ref|XP_004516722.1| PREDICTED: uncharacterized protein LOC101503288 [Cicer arietinum] >gi|502181260|ref|XP_004516768.1| PREDICTED: uncharacterized protein LOC101496645 [Cicer arietinum])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|388496598|gb|AFK36365.1| (unknown [Lotus japonicus])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|502166282|ref|XP_004513846.1| (PREDICTED: uncharacterized protein LOC101505414 [Cicer arietinum])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|356545555|ref|XP_003541205.1| (PREDICTED: uncharacterized protein LOC100787432, partial [Glycine max])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|356547768|ref|XP_003542281.1| (PREDICTED: uncharacterized protein LOC100808462 [Glycine max])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|356545580|ref|XP_003541217.1| (PREDICTED: uncharacterized protein LOC100795351 [Glycine max])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|356545584|ref|XP_003541219.1| (PREDICTED: uncharacterized protein LOC100796402 [Glycine max])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|356545558|ref|XP_003541206.1| (PREDICTED: uncharacterized protein LOC100788489 [Glycine max])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|502174722|ref|XP_004515586.1| (PREDICTED: uncharacterized protein LOC101510248 [Cicer arietinum])
BLAST of Medtr0052s0160.1 vs. NCBI nr
Match: gi|167859793|gb|ACA04850.1| (senescence-associated protein [Picea abies])
The following BLAST results are available for this feature:
BLAST of Medtr0052s0160.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|502128409|ref|XP_004499953.1|3.421960e-10796.82PREDICTED: uncharacterized protein LOC101515119 [C... [more]
gi|388496598|gb|AFK36365.1|6.241310e-10796.82unknown [Lotus japonicus][more]
gi|502166282|ref|XP_004513846.1|3.357790e-10696.18PREDICTED: uncharacterized protein LOC101505414 [C... [more]
gi|356545555|ref|XP_003541205.1|6.342160e-10695.54PREDICTED: uncharacterized protein LOC100787432, p... [more]
gi|356547768|ref|XP_003542281.1|7.293860e-10695.54PREDICTED: uncharacterized protein LOC100808462 [G... [more]
gi|356545580|ref|XP_003541217.1|7.693120e-10595.54PREDICTED: uncharacterized protein LOC100795351 [G... [more]
gi|356545584|ref|XP_003541219.1|1.827160e-10495.54PREDICTED: uncharacterized protein LOC100796402 [G... [more]
gi|356545558|ref|XP_003541206.1|1.292580e-10395.54PREDICTED: uncharacterized protein LOC100788489 [G... [more]
gi|502174722|ref|XP_004515586.1|1.195540e-9991.08PREDICTED: uncharacterized protein LOC101510248 [C... [more]
gi|167859793|gb|ACA04850.1|3.662070e-9487.90senescence-associated protein [Picea abies][more]

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Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
BlastP Analysis2014-08-26
PhyloFun GO Analysis2014-08-26
Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0052s0160.1 ID=Medtr0052s0160.1|Name=Medtr0052s0160.1|organism=Medicago truncatula|type=mRNA|length=474bp
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA
CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT
CTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACG
GTTCGCATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGT
TCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACTTGCGTT
ATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC
TTCCGCCCGGATCGGCCAACCAAAGTCGGCCTTGGATCTAAAAAGAGGGG
CAGCGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAG
TGGTATTTCACTTTCGGTGTTTCCAGCTCCCACTTATCCTACACCTCTCA
AGTCATTTCACAAAGTCGAACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0001071nucleic acid binding transcription factor activity
GO:0003674molecular_function
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003690double-stranded DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005488binding
GO:0008134transcription factor binding
GO:0043566structure-specific DNA binding
GO:0097159organic cyclic compound binding
GO:1901363heterocyclic compound binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006139nucleobase-containing compound metabolic process
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0006725cellular aromatic compound metabolic process
GO:0006807nitrogen compound metabolic process
GO:0008150biological_process
GO:0008283cell proliferation
GO:0009058biosynthetic process
GO:0009059macromolecule biosynthetic process
GO:0009303rRNA transcription
GO:0009889regulation of biosynthetic process
GO:0009987cellular process
GO:0010467gene expression
GO:0010468regulation of gene expression
GO:0010556regulation of macromolecule biosynthetic process
GO:0016070RNA metabolic process
GO:0018130heterocycle biosynthetic process
GO:0019219regulation of nucleobase-containing compound metabolic process
GO:0019222regulation of metabolic process
GO:0019438aromatic compound biosynthetic process
GO:0031323regulation of cellular metabolic process
GO:0031326regulation of cellular biosynthetic process
GO:0032774RNA biosynthetic process
GO:0034641cellular nitrogen compound metabolic process
GO:0034645cellular macromolecule biosynthetic process
GO:0034654nucleobase-containing compound biosynthetic process
GO:0043170macromolecule metabolic process
GO:0044237cellular metabolic process
GO:0044238primary metabolic process
GO:0044249cellular biosynthetic process
GO:0044260cellular macromolecule metabolic process
GO:0044271cellular nitrogen compound biosynthetic process
GO:0044699single-organism process
GO:0046483heterocycle metabolic process
GO:0050789regulation of biological process
GO:0050794regulation of cellular process
GO:0051171regulation of nitrogen compound metabolic process
GO:0051252regulation of RNA metabolic process
GO:0060255regulation of macromolecule metabolic process
GO:0065007biological regulation
GO:0071704organic substance metabolic process
GO:0080090regulation of primary metabolic process
GO:0090304nucleic acid metabolic process
GO:1901360organic cyclic compound metabolic process
GO:1901362organic cyclic compound biosynthetic process
GO:1901576organic substance biosynthetic process
GO:2000112regulation of cellular macromolecule biosynthetic process
GO:2001141regulation of RNA biosynthetic process