Overview
NameMedtr0046s0100.1
Unique NameMedtr0046s0100.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length1488
Homology
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|260401291|gb|ACX37122.1| (ORF1 [Pisum sativum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|34761727|gb|AAQ82036.1| (unknown [Pisum sativum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|34761717|gb|AAQ82030.1| (unknown [Pisum sativum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|34761723|gb|AAQ82034.1| (unknown [Pisum sativum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|34761720|gb|AAQ82032.1| (unknown [Pisum sativum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|502127705|ref|XP_004499805.1| (PREDICTED: uncharacterized protein LOC101503074 [Cicer arietinum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|502100826|ref|XP_004491752.1| (PREDICTED: uncharacterized protein LOC101511401 [Cicer arietinum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|502178833|ref|XP_004516329.1| (PREDICTED: uncharacterized protein LOC101495653 [Cicer arietinum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|502101963|ref|XP_004491925.1| (PREDICTED: uncharacterized protein LOC101494239 [Cicer arietinum] >gi|502158366|ref|XP_004511123.1| PREDICTED: uncharacterized protein LOC101500169 [Cicer arietinum])
BLAST of Medtr0046s0100.1 vs. NCBI nr
Match: gi|502170967|ref|XP_004514955.1| (PREDICTED: uncharacterized protein LOC101501357, partial [Cicer arietinum])
The following BLAST results are available for this feature:
BLAST of Medtr0046s0100.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|260401291|gb|ACX37122.1|1.014110e-8346.98ORF1 [Pisum sativum][more]
gi|34761727|gb|AAQ82036.1|6.203980e-6937.20unknown [Pisum sativum][more]
gi|34761717|gb|AAQ82030.1|1.959020e-6739.02unknown [Pisum sativum][more]
gi|34761723|gb|AAQ82034.1|2.312190e-6738.72unknown [Pisum sativum][more]
gi|34761720|gb|AAQ82032.1|1.166680e-6538.10unknown [Pisum sativum][more]
gi|502127705|ref|XP_004499805.1|2.799420e-5632.86PREDICTED: uncharacterized protein LOC101503074 [C... [more]
gi|502100826|ref|XP_004491752.1|1.007070e-5131.83PREDICTED: uncharacterized protein LOC101511401 [C... [more]
gi|502178833|ref|XP_004516329.1|1.184200e-5031.76PREDICTED: uncharacterized protein LOC101495653 [C... [more]
gi|502101963|ref|XP_004491925.1|1.280480e-4935.90PREDICTED: uncharacterized protein LOC101494239 [C... [more]
gi|502170967|ref|XP_004514955.1|6.815680e-4733.12PREDICTED: uncharacterized protein LOC101501357, p... [more]

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Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
InterPro Annotations2014-08-26
BlastP Analysis2014-08-26
InterPro
Analysis Name: InterPro Annotations
Date Performed: 2014-08-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILcoilcoiled-coilcoord: 416..437
score
NoneNo IPR availableSEGsegsegcoord: 400..415
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0046s0100.1 ID=Medtr0046s0100.1|Name=Medtr0046s0100.1|organism=Medicago truncatula|type=mRNA|length=1488bp
ATGGATGTTATTGGACTAGGAGCGTTCCTATACACCGATATATTCGTAAG
GGAAGTTGTAATTTGGGAACTTGGTAGAACCCGTGATACAGATATGGCTA
CTAGAAGTATTAGGAGGTACCGGTTCGTGAGCCAGGATTTGGAAGAGTTA
AGGAAATTGGGAGATTTTGTCTCTGATCCGTGGGGTTTCCAGTCTCGCCA
TGGAAAGTTACTCAACATCCTTAATTTGAAGTTCGACGAGGGAGTTCTCA
AGACCTTGGTCCAATTCTATAACCACCACTACCATTGCTTCATGTTCCCC
GATTATCTACTCCTCCCTACCCTTGAAGAGTATGCCCATTTGGTCGGATT
ACCAGTGCTTGATAGAGTACCCTTCAGTGGCCTTGAGGAGGTTCCTAAGC
CACTAGCCATTGCAAAGGCCCTTTGTCTCAAGATAACCGACATAACCTCT
AATCTCACTACCAAAGGAAGAGAGAAAATCCCAGGTTTAACTTCCGGATT
CCTAATCGGTAAAGCCAATGCTTGTATCAAAGCAAGGAGTTTCCATGCTT
TCGAGTCTATATTGGCTTTACTCATCTATGGTTTAGTGCTCTTTCCTACC
TATGACGGTTTTGTAGATGCAAATGCTATCCAAATATTCCTCACAAAGAA
CCCAGTCCCTACTCTTCTGGATGACACTTACCACTCCATCCATCATAGGA
ACGAGCAACAAGATGGACTTATTCTGTGTTGTGCACCGTTGCTATATAAG
TGGTACACCTTACATTTGCCTCGATCCTACCTCACTAAGGACAAAGGTCA
ATATTCCGAGAAGATCATGTCCCTGGCTACAACCGATGTAGTGTGGTACA
ACCCGGCCTATGACACTGGAACCATCATTGATAGTTGTGGGGAATTCAAC
AATGTGCCTCTCCTTGGTATACATGGAGGAATCAGCTATAATCTAATTCT
TGTCAGGCGCCAGTTTGGGTATCCTCTGAAGAATAGACCACTCAGCATCC
ATCTAGAGAATATGTATTACCACAACCAAAGTGATAGTAAAGATATGAGG
AATCAGATTGTGAGAGCTTGGCATACCATTCACAAGAAAAACAGCAACCA
ATTGGGGGAAAAGTCAAGCCTCACCTATGAAACCTATACTCAGTGGGTTA
TTGATGAAGCTGCTCGGTATCAGATGCCTTACCCATTACCTAGATACTTA
CCCTCAACTACCACGGTGTTGCCTCTACCATTACCTCCTACTACTCAAGA
AAAATATAGAGAAAATATGGATGATCTGCATCGCGAGTGTAATGTTTGGA
AGAAGAAGTACGAGGAAGAAGTGGCCAAAGTAAGGGAGAGAGATATGGAA
ATAGCACTGCAGAATCATGCACTCCTAAGGAAGGAGCAGAAAATCATAGA
ACTAAATGGTGTGATCCAAGAAAAAGATGCTTTGCTCAACCATGATCCAG
CAAGGAAGAAGAAGCAGAGGGTTTTCCGAGGAGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated