Overview
NameMedtr0041s0120.1
Unique NameMedtr0041s0120.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length1254
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
PFam
Analysis Name: PFAM Analysis
Date Performed: 2014-08-26
PFAM TermGenome CoordinatesProtein CoordinatesDomain Coordinatesdomain_scoreexpected_domaintotal_scoreexpected_whole
PF02362.1695734-9599192-1771-7952.63.8e-1853.71.1e-14
PF06507.896151-96396231-3122-8393.38.2e-3194.32.7e-27

Homology
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|356570756|ref|XP_003553551.1| (PREDICTED: auxin response factor 18-like [Glycine max])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|356537563|ref|XP_003537296.1| (PREDICTED: auxin response factor 18-like isoform X1 [Glycine max] >gi|571481827|ref|XP_006588784.1| PREDICTED: auxin response factor 18-like isoform X2 [Glycine max])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|595840619|ref|XP_007208053.1| (hypothetical protein PRUPE_ppa002195mg [Prunus persica] >gi|462403695|gb|EMJ09252.1| hypothetical protein PRUPE_ppa002195mg [Prunus persica])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|356545983|ref|XP_003541412.1| (PREDICTED: auxin response factor 18-like [Glycine max])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|658309370|ref|NP_001280997.1| (auxin response factor 18-like [Malus domestica] >gi|206572097|gb|ACI13681.1| putative auxin response factor ARF16 [Malus domestica])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|470137364|ref|XP_004304436.1| (PREDICTED: auxin response factor 18-like [Fragaria vesca subsp. vesca])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|590630648|ref|XP_007027336.1| (Auxin response factor 19 [Theobroma cacao] >gi|508715941|gb|EOY07838.1| Auxin response factor 19 [Theobroma cacao])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|460402311|ref|XP_004246657.1| (PREDICTED: auxin response factor 18-like [Solanum lycopersicum])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|502156787|ref|XP_004510646.1| (PREDICTED: auxin response factor 18-like [Cicer arietinum])
BLAST of Medtr0041s0120.1 vs. NCBI nr
Match: gi|225439992|ref|XP_002281486.1| (PREDICTED: auxin response factor 18-like [Vitis vinifera])
The following BLAST results are available for this feature:
BLAST of Medtr0041s0120.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|356570756|ref|XP_003553551.1|7.178330e-14159.83PREDICTED: auxin response factor 18-like [Glycine ... [more]
gi|356537563|ref|XP_003537296.1|7.801640e-13958.27PREDICTED: auxin response factor 18-like isoform X... [more]
gi|595840619|ref|XP_007208053.1|2.253050e-13657.18hypothetical protein PRUPE_ppa002195mg [Prunus per... [more]
gi|356545983|ref|XP_003541412.1|5.306690e-13656.37PREDICTED: auxin response factor 18-like [Glycine ... [more]
gi|658309370|ref|NP_001280997.1|7.149400e-13656.64auxin response factor 18-like [Malus domestica] >g... [more]
gi|470137364|ref|XP_004304436.1|1.350500e-13556.37PREDICTED: auxin response factor 18-like [Fragaria... [more]
gi|590630648|ref|XP_007027336.1|1.601510e-13555.83Auxin response factor 19 [Theobroma cacao] >gi|508... [more]
gi|460402311|ref|XP_004246657.1|2.550150e-13556.91PREDICTED: auxin response factor 18-like [Solanum ... [more]
gi|502156787|ref|XP_004510646.1|4.196540e-13459.64PREDICTED: auxin response factor 18-like [Cicer ar... [more]
gi|225439992|ref|XP_002281486.1|1.862850e-13156.37PREDICTED: auxin response factor 18-like [Vitis vi... [more]

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Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
InterPro Annotations2014-08-26
BlastP Analysis2014-08-26
PFAM Analysis2014-08-26
InterPro
Analysis Name: InterPro Annotations
Date Performed: 2014-08-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340Transcriptional factor B3PROFILEPS50863B3coord: 92..196
score: 8
IPR015300DNA-binding pseudobarrel domainGENE3D2.40.330.10no descriptioncoord: 83..177
score: 2.5
IPR015300DNA-binding pseudobarrel domainSUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 75..177
score: 5.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0041s0120.1 ID=Medtr0041s0120.1|Name=Medtr0041s0120.1|organism=Medicago truncatula|type=mRNA|length=1254bp
ATGGTGCAAATGCCAGAAGTTAACTCACAGGTCTTTTACTTCCCTCAGGG
TCACGCCGAGCATGCTTGTGAGCCGGTGAATTTCAGTGCTTACTCCAAAA
TTCCATCTTTCATTCCATGTAGAGTTGAAGATATAAGATATATGGCTAAT
CATGAGACCGATGAAGTGTATGCAAAACTCAGACTTGTCCCTATGAATAT
TAACCAGGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCCG
AAACAAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGAT
GCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAATGAT
TTTTCCTCGTATGGACTATTCAGGTAACCCTCCTTTTCAGGGCATATATC
CCAAGGATGTTCATGGTGAAAAGTGGCATTTCAGGCATGTTTATAGGGGC
ACGCCGAAGAGGCATTTATTGACAACTGGATGGAGTCCATTTGTCAGTGA
CAAGAAACTTGCTTCTGGGGATTCAGTCGTTGGAATTGGAATTTGTCCTG
CGCCACCTTACGGAGGATTTACATCGTTTTCAGAAGAGGAAGATAATAAA
CTTAGAAGAAATGGTAAAGGCAATGGATTACTAATAAGTGATGGAATGAT
GGGTAGGGGGAAGGTGAAAGTTCTAGAAGTTATTGAAGCAGTAAGACTCG
GTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCGGGTACT
CCTGAGTTTTTTGTGAAAACTTCTTTAATTGGAATCACACTTCAGATTAG
GTGGTGTCCTGGAATGAGGTTCAAGATGCCCATTGAAACCGAGGACTCAT
CAAGGATAAGTTGGTTTATCGGAACTGTTGCTTCTGTGCAGGCTGCTGAT
CCGTCATGGCCTGATTCTCTGTGGAGACTTCTCCAGCCTAGTTTCCAACA
ACCGTTTAATAACATTTCTACAATGCTGATGACTCTCACTAATAACTCGG
TATTGCAAAAGCCGAACACCAGCGAGAACGTTTGCTCGCATTCGATATCA
ACTTCTACACAATCTTTAAAGAAACCGGATCATGCAAAGCCGCACCAGCT
CGTGCTTTTTGGCCAAACAATACAAATTGACGCTGGAAATGAAACTTCCG
AGAAGAAAATGACTAATCATTTGTCTGATCTTCATCTACAAGGCCTGCCG
ACACGTTCCTCTGATGAGAGATTTGAGTGGAATCCTAAGAACCAATGCGA
ATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003340Transcriptional factor B3
IPR015300DNA-binding pseudobarrel domain
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding