Overview
NameMedtr0029s0020.1
Unique NameMedtr0029s0020.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length1437
Homology
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|34761727|gb|AAQ82036.1| (unknown [Pisum sativum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|34761720|gb|AAQ82032.1| (unknown [Pisum sativum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|34761717|gb|AAQ82030.1| (unknown [Pisum sativum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|34761723|gb|AAQ82034.1| (unknown [Pisum sativum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|260401291|gb|ACX37122.1| (ORF1 [Pisum sativum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|502127705|ref|XP_004499805.1| (PREDICTED: uncharacterized protein LOC101503074 [Cicer arietinum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|502100826|ref|XP_004491752.1| (PREDICTED: uncharacterized protein LOC101511401 [Cicer arietinum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|502178833|ref|XP_004516329.1| (PREDICTED: uncharacterized protein LOC101495653 [Cicer arietinum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|502170967|ref|XP_004514955.1| (PREDICTED: uncharacterized protein LOC101501357, partial [Cicer arietinum])
BLAST of Medtr0029s0020.1 vs. NCBI nr
Match: gi|502101963|ref|XP_004491925.1| (PREDICTED: uncharacterized protein LOC101494239 [Cicer arietinum] >gi|502158366|ref|XP_004511123.1| PREDICTED: uncharacterized protein LOC101500169 [Cicer arietinum])
The following BLAST results are available for this feature:
BLAST of Medtr0029s0020.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|34761727|gb|AAQ82036.1|7.643910e-8540.81unknown [Pisum sativum][more]
gi|34761720|gb|AAQ82032.1|2.967090e-8039.44unknown [Pisum sativum][more]
gi|34761717|gb|AAQ82030.1|3.819380e-8041.06unknown [Pisum sativum][more]
gi|34761723|gb|AAQ82034.1|9.537430e-8039.44unknown [Pisum sativum][more]
gi|260401291|gb|ACX37122.1|2.470850e-7644.26ORF1 [Pisum sativum][more]
gi|502127705|ref|XP_004499805.1|1.936930e-6534.20PREDICTED: uncharacterized protein LOC101503074 [C... [more]
gi|502100826|ref|XP_004491752.1|2.232620e-6035.69PREDICTED: uncharacterized protein LOC101511401 [C... [more]
gi|502178833|ref|XP_004516329.1|4.500660e-6035.88PREDICTED: uncharacterized protein LOC101495653 [C... [more]
gi|502170967|ref|XP_004514955.1|2.433580e-5836.66PREDICTED: uncharacterized protein LOC101501357, p... [more]
gi|502101963|ref|XP_004491925.1|6.344110e-5836.42PREDICTED: uncharacterized protein LOC101494239 [C... [more]

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Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
InterPro Annotations2014-08-26
BlastP Analysis2014-08-26
InterPro
Analysis Name: InterPro Annotations
Date Performed: 2014-08-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILcoilcoiled-coilcoord: 387..408
score: NAcoord: 422..443
score
NoneNo IPR availableSEGsegsegcoord: 147..160
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0029s0020.1 ID=Medtr0029s0020.1|Name=Medtr0029s0020.1|organism=Medicago truncatula|type=mRNA|length=1437bp
ATGAAGAAGACTAAATCCTACAAGTTCAAAGAGGTTGATTTGGTTAGTTT
GAGAGAGTTGGCACTCAAGGTAAAGAATCAAACAGGTTTCCGACTCCGGT
ATGGTGGTTTGCTTACTATTCTCCGGACTAATGTGGAAGAGAAGCTAGTG
CACACTCTCGTGCAATTCTATGATCCAAGCTTCCGCTGCTTCACTTTCCC
GGATTTTCAGTTGGTCCCTACTCTTGAGGCTTATTCATACTTGTTAGGCT
CACCTATAGCCGAGAAGACGCCCTTCACCGGTCCCGGGACTTCTCTTACT
CCTCTGGTTATTGCTAAGGACCTCTATCTCAAGACTTCTGATGTCTCCAA
GCATCTTACTACTAAGTCTCACATCCGAGGGTTCACTTCCAAGTATCTAC
TTGAGCAAGCTAGTCTCGAAACCACTTGTCAGGACACGCTCGAGGCTATC
CTTGCATTGCTTATCTACGGGCTCATTCTCTTTCCAAACCTCGACAACTT
TGTGGACATGAATGCTATTGAGATCTTCCATTCTAGGAATCCGGTTCCTA
CCCTGCTAGCTGACATGTACCATGCTATTCATGACCGGACTCTCAAAGGT
CGTGGATACATTCTTTGCTGCATACCTCTTCTATATAGGTGGTTTATTTC
GCACCTTCCGAGTTCCTTCCATGACAACTCGGAGAATTGGTCCTACTCTC
AGCGGATTATGGCTCTCACTCCTAATGAGGTGGTCTGGATCACTCCCGCC
GCTCAAGTCAAGGAGATTATTACTGGTTGTGGAGACTTTCTCAATGTACC
TCTTCTTGGTACCCGTGGGGGAATCAACTACAATCCGGAGCTTGCTATGA
GACAGTTTGGGTTCCCTATGAAGACAAAGCCCATCAATCTTGCTACATCT
CCGGAGTTCTTCTATTATTCGAACGCCCCCACCGGACAAAGGGAGGCTTT
CACAAGGGCTTGGTCTAAGGTCCGTAGGAAGAGTGTGAAGCATTTGGGTG
TGAGATCTGGTATTGCTCATGAGGCCTATACTCAGTGGGTAATAAACCGA
GCCGAAGAGATTGGTATGCCATACCCTGCTATGAGACATGTGGCTGCATT
TGCTCCATCTATACCTTTACCTCTACCTCCCACAACTCAGGAGATGTATC
AGGAGCATCTGGCCATGGAAAGTCGTGAGAAACAAATGTGGAAGGCCCGA
TACAATGAGGCTGAGAATCTAATCATGACTTTGGGTGGTAAGGATGAGCA
GAAGACTCATGAGAACCTAATGCTGAAGAAGGAATTGGTTAAGGTCCGAA
GGGAACTTGAAGAAAAGGATGAGCTACTTATGCGGGACTCCAAGAGAGCT
AGAGGACGACGCAACTTCTATGCTAGATATTGCGGTTCGGATTCGGAGTC
TGAGTTTGAGGATCATCCCACCACTTCCTATGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated