Overview
NameMedtr0027s0180.1
Unique NameMedtr0027s0180.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length1374
Homology
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|502103636|ref|XP_004492330.1| (PREDICTED: uncharacterized protein LOC101498909 [Cicer arietinum])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|297744300|emb|CBI37270.3| (unnamed protein product [Vitis vinifera])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|590714082|ref|XP_007049816.1| (Uncharacterized protein isoform 1 [Theobroma cacao] >gi|508702077|gb|EOX93973.1| Uncharacterized protein isoform 1 [Theobroma cacao])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|255560201|ref|XP_002521118.1| (conserved hypothetical protein [Ricinus communis] >gi|223539687|gb|EEF41269.1| conserved hypothetical protein [Ricinus communis])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|590714086|ref|XP_007049817.1| (Uncharacterized protein isoform 2, partial [Theobroma cacao] >gi|508702078|gb|EOX93974.1| Uncharacterized protein isoform 2, partial [Theobroma cacao])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|470112312|ref|XP_004292380.1| (PREDICTED: uncharacterized protein LOC101311157 [Fragaria vesca subsp. vesca])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|595798494|ref|XP_007201395.1| (hypothetical protein PRUPE_ppa012203mg [Prunus persica] >gi|462396795|gb|EMJ02594.1| hypothetical protein PRUPE_ppa012203mg [Prunus persica])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|224065316|ref|XP_002301771.1| (predicted protein [Populus trichocarpa])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|460403235|ref|XP_004247099.1| (PREDICTED: uncharacterized protein LOC101261061 [Solanum lycopersicum])
BLAST of Medtr0027s0180.1 vs. NCBI nr
Match: gi|449468620|ref|XP_004152019.1| (PREDICTED: uncharacterized protein LOC101208427 [Cucumis sativus] >gi|449518256|ref|XP_004166158.1| PREDICTED: uncharacterized LOC101208427 [Cucumis sativus])
The following BLAST results are available for this feature:
BLAST of Medtr0027s0180.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|502103636|ref|XP_004492330.1|2.658840e-12975.49PREDICTED: uncharacterized protein LOC101498909 [C... [more]
gi|297744300|emb|CBI37270.3|8.493270e-6752.78unnamed protein product [Vitis vinifera][more]
gi|590714082|ref|XP_007049816.1|3.542940e-6655.36Uncharacterized protein isoform 1 [Theobroma cacao... [more]
gi|255560201|ref|XP_002521118.1|8.373690e-6252.53conserved hypothetical protein [Ricinus communis] ... [more]
gi|590714086|ref|XP_007049817.1|1.850300e-6154.13Uncharacterized protein isoform 2, partial [Theobr... [more]
gi|470112312|ref|XP_004292380.1|5.582320e-5648.73PREDICTED: uncharacterized protein LOC101311157 [F... [more]
gi|595798494|ref|XP_007201395.1|1.075470e-5357.67hypothetical protein PRUPE_ppa012203mg [Prunus per... [more]
gi|224065316|ref|XP_002301771.1|8.263780e-4852.20predicted protein [Populus trichocarpa][more]
gi|460403235|ref|XP_004247099.1|5.371790e-4253.76PREDICTED: uncharacterized protein LOC101261061 [S... [more]
gi|449468620|ref|XP_004152019.1|8.320250e-3646.00PREDICTED: uncharacterized protein LOC101208427 [C... [more]

Pages

back to top
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
InterPro Annotations2014-08-26
BlastP Analysis2014-08-26
InterPro
Analysis Name: InterPro Annotations
Date Performed: 2014-08-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 120..132
score: NAcoord: 398..415
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0027s0180.1 ID=Medtr0027s0180.1|Name=Medtr0027s0180.1|organism=Medicago truncatula|type=mRNA|length=1374bp
ATGGCACCCACACCAGAGAATATATTTTTCATTGTACACTACAATGGAAA
AGTTTCAAGAAATCAATTTGGTTCATTTTTTGAAAGTGAGCAAAGAAAAT
GTTTTTATGTTAGCATCAAAAGCAACATTGATCATTTGAAAAAAAGAATA
GAGCAGAAACTACATCTCACTGAATCTCAGGTGATATCTAAAATTATATA
TCGAGCACCACAAGCCTTCGTTCAAGGTCATATCCAGTATAATGATACCG
AAATATACGACAACGATGACATTGCAGATATGTTTGCAACTCACAAATAT
TTTAATGCGGTTGGTTCCATTGAGTTATCGGTTATTATTGAAAACCGGGA
GATTTCACAACCGCGTCAAACACCACAACCGCGTCAAACACCTCAATTGT
TTTCACAAACACAATATGAGTTTGAACACCCATCTTCATCACAACAATTA
CCATACACCGAGCTACTCTCACAAACACAATATGAGTTTTGCCTAAGCCG
CCTTTTCAGCTTCGACGGCCAAGATGCCCCAGTAGGCGAGAAATCTCAGT
GGAAACTTCTTCATCATCCTCCTATTCAGCCTCAGATACAAGGAACTCAA
AGTCGAGAGAGAGTACAAGAACAAAATGGTAAAGGGAATATTAGTGGACT
AAAGCAAGATGGATCATATAAAAGGACAAAGAGGTTTTCATGCAGCAAAG
ATGGTTACAAGAATTTGAAGATATTCTCTTTACTATATAGAAAAGACATT
CCAAAGGCTTGTTTTTTCAGAACCCTTAGCTTAAAGAGAATAGGCATTAG
TAGAAGACATTTTGTGTACTCTATGAAAATGAAGAAAGAAGAATCATCTA
GAGATGAAGGAATTGTTAACAAGACAGACTCAACAACTCATGGAGGAAAC
AAGGTTTTGCCTATAACTCAAGAAGCACCATTATCATCTTCAGCTGAAAG
AAATGACCAATGTGATAATACAATAACTAAAGATCAAGTTAAAGGTGATA
GAAAGAAACCTATGTCTAGAATGAAAGAGTTGCTTAGATGGGCTGCTGCC
TCTGCCAAGACAGATAAAGGAGGAAAATTCTATGGAAGAAAGGTTTTAAT
GTTCCGGAGACGTGGAAACCTGAAAGCAGTTCAAGATGATGATCAAGTTT
CAACTGAGTCACCAAAGATCAGTTTCAGATGGGATATGGAAAGCTGTTCC
ACTACTTCATCTGCCTACTCAGCTTTCTCAATGGCCTCTTCAACAAGAAA
TGGACAAAACCAAACTGCAACTTCCACCATATCCATCCCTTCTTCACAAA
GTGGTCACACCACTTGTAGAAGAAAAGCAAACTGGATCACAACAGACTCT
GAATTTGTGGTGCTGGAACTATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated