Overview
NameMedtr0024s0140.1
Unique NameMedtr0024s0140.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length696
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0022607 cellular component assembly
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0016043 cellular component organization
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0034622 cellular macromolecular complex assembly
biological_process GO:0043623 cellular protein complex assembly
biological_process GO:0017004 cytochrome complex assembly
biological_process GO:0065003 macromolecular complex assembly
biological_process GO:0043933 macromolecular complex subunit organization
biological_process GO:0006461 protein complex assembly
biological_process GO:0070271 protein complex biogenesis
biological_process GO:0071822 protein complex subunit organization
biological_process GO:0008535 respiratory chain complex IV assembly
cellular_component GO:0005623 cell
cellular_component GO:0044464 cell part
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005622 intracellular
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0043229 intracellular organelle
cellular_component GO:0044424 intracellular part
cellular_component GO:0043227 membrane-bounded organelle
cellular_component GO:0005739 mitochondrion
cellular_component GO:0043226 organelle
Homology
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|442803232|gb|AGC78967.1| (hypothetical protein (mitochondrion) [Vicia faba] >gi|442803259|gb|AGC78994.1| hypothetical protein (mitochondrion) [Vicia faba])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|442803230|gb|AGC78965.1| (cytochrome c biogenesis FC (mitochondrion) [Vicia faba] >gi|442803257|gb|AGC78992.1| cytochrome c biogenesis FC (mitochondrion) [Vicia faba])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|476507683|ref|YP_007516870.1| (cytochrome c biogenesis FC (mitochondrion) [Glycine max] >gi|403311561|gb|AFR34309.1| cytochrome c biogenesis FC (mitochondrion) [Glycine max])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|323149032|ref|YP_004222809.1| (cytochrome c biogenesis FC [Vigna radiata] >gi|308206738|gb|ADO19875.1| cytochrome c biogenesis FC [Vigna radiata])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|320148073|emb|CBX33249.1| (hypothetical protein [Beta vulgaris subsp. maritima])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|323435170|ref|YP_004222388.1| (hypothetical protein BevumaM_p155 [Beta vulgaris subsp. maritima] >gi|346683261|ref|YP_004842194.1| hypothetical protein BemaM_p150 [Beta macrocarpa] >gi|317905620|emb|CBX33222.1| hypothetical protein [Beta vulgaris subsp. maritima] >gi|319439903|emb|CBX33317.1| hypothetical protein [Beta vulgaris subsp. maritima] >gi|345500179|emb|CBX24998.1| hypothetical protein [Beta macrocarpa] >gi|384939164|emb|CBL52011.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|372450276|ref|YP_005090459.1| (cytochrome c biogenesis FC (mitochondrion) [Millettia pinnata] >gi|357197322|gb|AET62919.1| cytochrome c biogenesis FC (mitochondrion) [Millettia pinnata])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|62320468|dbj|BAD94978.1| (cytochrome c biogenesis orf452 [Arabidopsis thaliana])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|224108171|ref|XP_002333424.1| (predicted protein [Populus trichocarpa])
BLAST of Medtr0024s0140.1 vs. NCBI nr
Match: gi|386799234|ref|YP_006291801.1| (ccmFc gene product (mitochondrion) [Daucus carota subsp. sativus] >gi|374081937|gb|AEY81129.1| cytochrome c biogenesis FC (mitochondrion) [Daucus carota subsp. sativus])
The following BLAST results are available for this feature:
BLAST of Medtr0024s0140.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|442803232|gb|AGC78967.1|1.301420e-16096.97hypothetical protein (mitochondrion) [Vicia faba] ... [more]
gi|442803230|gb|AGC78965.1|1.581110e-13096.89cytochrome c biogenesis FC (mitochondrion) [Vicia ... [more]
gi|476507683|ref|YP_007516870.1|1.138330e-11895.85cytochrome c biogenesis FC (mitochondrion) [Glycin... [more]
gi|323149032|ref|YP_004222809.1|2.162380e-11895.85cytochrome c biogenesis FC [Vigna radiata] >gi|308... [more]
gi|320148073|emb|CBX33249.1|5.253180e-11883.98hypothetical protein [Beta vulgaris subsp. maritim... [more]
gi|323435170|ref|YP_004222388.1|5.731620e-11883.98hypothetical protein BevumaM_p155 [Beta vulgaris s... [more]
gi|372450276|ref|YP_005090459.1|2.051300e-11194.36cytochrome c biogenesis FC (mitochondrion) [Millet... [more]
gi|62320468|dbj|BAD94978.1|2.683230e-11185.11cytochrome c biogenesis orf452 [Arabidopsis thalia... [more]
gi|224108171|ref|XP_002333424.1|3.853390e-10187.56predicted protein [Populus trichocarpa][more]
gi|386799234|ref|YP_006291801.1|6.455630e-9782.00ccmFc gene product (mitochondrion) [Daucus carota ... [more]

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Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
InterPro Annotations2014-08-26
BlastP Analysis2014-08-26
PhyloFun GO Analysis2014-08-26
InterPro
Analysis Name: InterPro Annotations
Date Performed: 2014-08-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 76..94
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0024s0140.1 ID=Medtr0024s0140.1|Name=Medtr0024s0140.1|organism=Medicago truncatula|type=mRNA|length=696bp
ATGGACGGAGCAAAAAATGGAGTCTTGGTCAGAGCAAGCCGCCCTATTCT
ATTACCAGACATAATTGGGAGAAGCTCATCCGAAACTAGAGCTGGAAACG
CCTCATTTCGTTTAGTTCCCGTTCTTCATTTCCTTCTTATCGAATCCAAG
GGGGACTTCTCATATTTAGAATCTTTCTGCGGTGTGCTCTGTTTACTATT
CTTTCGTACTCTCTTCTCTTTACCACGCGATAGGTCAGCAAAGCGTGAGC
GGGCGCGGAGAAGGATACACCAAAGACTTAGGCCTAACCCTAATGGGAAT
GAGCAACAACGAAATGACAAGATGGGGTGCTCCGGGCACCCCCATTTAGA
AAGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGTCCCCCCTTCGT
CGGGTGGTGCTTGTGTGGGGGGTGTGCCACCTGAACCTGAAATCGGGCTT
GAAGCTCTCGCCTTACCAACGAGCCAACAACTGATGGCTGTTGGTCACGA
CTACCACCAAAAAGCTCCAATGAAGATGAATATTTCACATTTTGGAGTGT
GCATCTGTATGTTGGGTGTTCTTCTGTCGTGCGACCCGGCGGCTTATGTG
CGACCTGTGGCCCACGCCTCCTATTTGTTCGGGGCGGGCGGCGTGAACTC
TGACTCGATCCGGGAATTCAATCCCGCCGCTGAGATGCTCAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005575cellular_component
GO:0005739mitochondrion
GO:0005623cell
GO:0005737cytoplasm
GO:0043231intracellular membrane-bounded organelle
GO:0043226organelle
GO:0043227membrane-bounded organelle
GO:0043229intracellular organelle
GO:0044424intracellular part
GO:0044444cytoplasmic part
GO:0044464cell part
Vocabulary: Biological Process
TermDefinition
GO:0006461protein complex assembly
GO:0008150biological_process
GO:0008535respiratory chain complex IV assembly
GO:0022607cellular component assembly
GO:0016043cellular component organization
GO:0017004cytochrome complex assembly
GO:0034622cellular macromolecular complex assembly
GO:0043623cellular protein complex assembly
GO:0043933macromolecular complex subunit organization
GO:0044085cellular component biogenesis
GO:0065003macromolecular complex assembly
GO:0070271protein complex biogenesis
GO:0071822protein complex subunit organization
GO:0071840cellular component organization or biogenesis