Overview
NameMedtr0003s0260.1
Unique NameMedtr0003s0260.1
TypemRNA
OrganismMedicago truncatula (Barrel Medic)
Sequence length681
PFam
Analysis Name: PFAM Analysis
Date Performed: 2014-08-26
PFAM TermGenome CoordinatesProtein CoordinatesDomain Coordinatesdomain_scoreexpected_domaintotal_scoreexpected_whole
PF05970.9124096-123740108-2262-120143.31.1e-45144.82.8e-42
PF13604.1124096-123761108-2192-10430.72.7e-1131.31.3e-07

Homology
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|356503220|ref|XP_003520409.1| (PREDICTED: uncharacterized protein LOC100775782 [Glycine max])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|387965705|gb|AFK13834.1| (putative PIF1 DNA helicase/replication protein A1-like protein [Beta vulgaris subsp. vulgaris])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502090176|ref|XP_004489145.1| (PREDICTED: uncharacterized protein LOC101512586 [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502114320|ref|XP_004494929.1| (PREDICTED: uncharacterized protein LOC101492850, partial [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502131846|ref|XP_004501122.1| (PREDICTED: uncharacterized protein LOC101510714, partial [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502129922|ref|XP_004500470.1| (PREDICTED: uncharacterized protein LOC101490822, partial [Cicer arietinum] >gi|502142384|ref|XP_004504931.1| PREDICTED: uncharacterized protein LOC101515354, partial [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502156462|ref|XP_004510486.1| (PREDICTED: uncharacterized protein LOC101514966, partial [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502178533|ref|XP_004516277.1| (PREDICTED: uncharacterized protein LOC101496422 [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502134642|ref|XP_004502192.1| (PREDICTED: uncharacterized protein LOC101501924 [Cicer arietinum])
BLAST of Medtr0003s0260.1 vs. NCBI nr
Match: gi|502155583|ref|XP_004510124.1| (PREDICTED: uncharacterized protein LOC101506803 [Cicer arietinum])
The following BLAST results are available for this feature:
BLAST of Medtr0003s0260.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20
Match NameE-valueIdentityDescription
gi|356503220|ref|XP_003520409.1|2.752740e-6247.14PREDICTED: uncharacterized protein LOC100775782 [G... [more]
gi|387965705|gb|AFK13834.1|8.721670e-5946.02putative PIF1 DNA helicase/replication protein A1-... [more]
gi|502090176|ref|XP_004489145.1|2.530920e-5445.79PREDICTED: uncharacterized protein LOC101512586 [C... [more]
gi|502114320|ref|XP_004494929.1|2.740160e-5445.79PREDICTED: uncharacterized protein LOC101492850, p... [more]
gi|502131846|ref|XP_004501122.1|2.764530e-5445.79PREDICTED: uncharacterized protein LOC101510714, p... [more]
gi|502129922|ref|XP_004500470.1|2.767860e-5445.79PREDICTED: uncharacterized protein LOC101490822, p... [more]
gi|502156462|ref|XP_004510486.1|2.824100e-5445.79PREDICTED: uncharacterized protein LOC101514966, p... [more]
gi|502178533|ref|XP_004516277.1|3.556110e-5445.79PREDICTED: uncharacterized protein LOC101496422 [C... [more]
gi|502134642|ref|XP_004502192.1|4.255530e-5445.79PREDICTED: uncharacterized protein LOC101501924 [C... [more]
gi|502155583|ref|XP_004510124.1|1.084200e-5345.79PREDICTED: uncharacterized protein LOC101506803 [C... [more]

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Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of M.truncatula2014-08-19
InterPro Annotations2014-08-26
BlastP Analysis2014-08-26
PFAM Analysis2014-08-26
InterPro
Analysis Name: InterPro Annotations
Date Performed: 2014-08-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 86..219
score: 1.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>Medtr0003s0260.1 ID=Medtr0003s0260.1|Name=Medtr0003s0260.1|organism=Medicago truncatula|type=mRNA|length=681bp
ATGTTACTATTCGGAGCAATCAACAAACTAAATCATGTATGGAATAACAC
TATCCAATGGTTGTCAGATGGAATTCTTCATTCTCAGCGAATTCTTGCAA
AAAACCAAGAATTAGAACTAACAAATGAACAATTGCACAATTTGACATTG
ATTGAAATTGAGAAGTGCTTGCAATCCAGTAGACGTACTCTCAAGGAATT
TTCTTCACTACCTTATCCAAAGGGATACGTCCTTGAACAGTTAGGGAACA
GACTCATATACGACGAATGCAATTATGATATTCCTACCCTGAAAGCAGAA
TTTGCAGAATTACATGCTTTGTTAACAGATGAACAGAGAAAATTTTTCAA
TCAAATCATGACTTCAGTTACAAAACAAATGGGAGGTGTCTTTTTCTTGC
ATGGATATGGTGGAACAGGCAAAACATTCATGTGGCGTACACTGGCAAGT
GCATTAAGATCCAAACATGATATTGTATTGAAAGTGGCAACAAGTGGAAT
CACATCTCTACTTTTACCAGGATGCCGAACAACTCACTCAAAATTTAAAA
TCACAGTTCCAACATTAGACAATTCTACTTATAATATTGATCATGATAGT
GACCTGAATAAACTTCTAAGAGAAACCAAGTTGATAATTTGGGATGAGGC
ACCCATGGAACATAGATATACTTTTGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated