Medtr0002s0020.1

Overview


Name	Medtr0002s0020.1
Unique Name	Medtr0002s0020.1
Type	mRNA
Organism	Medicago truncatula (Barrel Medic)
Sequence length	867

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

PFam

Analysis Name: PFAM Analysis
Date Performed: 2014-08-26


PFAM Term	Genome Coordinates	Protein Coordinates	Domain Coordinates	domain_score	expected_domain	total_score	expected_whole
PF14299.1	7700-8176	120-278	1-151	127.9	1.3e-41	128.3	1.4e-37

Homology

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|502157395|ref|XP_004510862.1| (PREDICTED: F-box protein PP2-A13-like isoform X1 [Cicer arietinum])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|356505068|ref|XP_003521314.1| (PREDICTED: F-box protein PP2-A13-like [Glycine max])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|356520469|ref|XP_003528884.1| (PREDICTED: F-box protein PP2-A13-like [Glycine max])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|590722541|ref|XP_007051924.1| (Phloem protein 2-A13 [Theobroma cacao] >gi|508704185|gb|EOX96081.1| Phloem protein 2-A13 [Theobroma cacao])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|224127502|ref|XP_002320090.1| (f-box family protein [Populus trichocarpa])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|225453740|ref|XP_002269833.1| (PREDICTED: F-box protein PP2-A13 [Vitis vinifera] >gi|296089069|emb|CBI38772.3| unnamed protein product [Vitis vinifera])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|470142282|ref|XP_004306840.1| (PREDICTED: F-box protein PP2-A13-like [Fragaria vesca subsp. vesca])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|596015259|ref|XP_007218786.1| (hypothetical protein PRUPE_ppa009695mg [Prunus persica] >gi|462415248|gb|EMJ19985.1| hypothetical protein PRUPE_ppa009695mg [Prunus persica])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|225426781|ref|XP_002282844.1| (PREDICTED: F-box protein PP2-A12 [Vitis vinifera])

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BLAST of Medtr0002s0020.1 vs. NCBI nr
Match: gi|297742595|emb|CBI34744.3| (unnamed protein product [Vitis vinifera])

The following BLAST results are available for this feature:

BLAST of Medtr0002s0020.1 vs. NCBI nr

BLAST of Medtr0002s0020.1 vs. NCBI nr
Analysis Date: 2014-08-26 (BlastP Analysis)
Total hits: 20


Match Name	E-value	Identity	Description
gi\|502157395\|ref\|XP_004510862.1\|	0.000000e+0	87.80	PREDICTED: F-box protein PP2-A13-like isoform X1 [...	[more]
gi\|356505068\|ref\|XP_003521314.1\|	1.434670e-174	82.64	PREDICTED: F-box protein PP2-A13-like [Glycine max...	[more]
gi\|356520469\|ref\|XP_003528884.1\|	3.593930e-174	82.64	PREDICTED: F-box protein PP2-A13-like [Glycine max...	[more]
gi\|590722541\|ref\|XP_007051924.1\|	7.289760e-144	69.44	Phloem protein 2-A13 [Theobroma cacao] >gi\|5087041...	[more]
gi\|224127502\|ref\|XP_002320090.1\|	1.068290e-141	67.61	f-box family protein [Populus trichocarpa]	[more]
gi\|225453740\|ref\|XP_002269833.1\|	1.478200e-138	69.04	PREDICTED: F-box protein PP2-A13 [Vitis vinifera] ...	[more]
gi\|470142282\|ref\|XP_004306840.1\|	2.480780e-138	66.55	PREDICTED: F-box protein PP2-A13-like [Fragaria ve...	[more]
gi\|596015259\|ref\|XP_007218786.1\|	2.340700e-135	64.69	hypothetical protein PRUPE_ppa009695mg [Prunus per...	[more]
gi\|225426781\|ref\|XP_002282844.1\|	6.539010e-134	66.55	PREDICTED: F-box protein PP2-A12 [Vitis vinifera]	[more]
gi\|297742595\|emb\|CBI34744.3\|	1.118820e-133	66.55	unnamed protein product [Vitis vinifera]	[more]

Pages

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of M.truncatula	2014-08-19
InterPro Annotations	2014-08-26
BlastP Analysis	2014-08-26
PFAM Analysis	2014-08-26

InterPro

Analysis Name: InterPro Annotations
Date Performed: 2014-08-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain, cyclin-like	PROFILE	PS50181	FBOX	coord: 19..65 score: 9
IPR022364	F-box domain, Skp2-like	SUPERFAMILY	81383	F-box domain	coord: 12..70 score: 1.2
None	No IPR available	GENE3D	1.20.1280.50	no description	coord: 22..63 score: 0.0

Sequences

The following sequences are available for this feature:

mRNA sequence

mRNA sequence

>Medtr0002s0020.1 ID=Medtr0002s0020.1|Name=Medtr0002s0020.1|organism=Medicago truncatula|type=mRNA|length=867bp
ATGGGTGCTAATTTTTCCTCATGTGTATGTGATGGAGATGAGGATTGTAG
TATGAGGCCAAGGCTTGGGGATATACCAGAGAGTTGTGTGGCATTGGTGT
TGATGTATTTGGATCCACCGGATATATGTAAGCTAGCACGATTGAATAGG
GCGTTTCGTGATGCTTCTTTTGCCGATTTTGTTTGGGAATCGAAGTTGCC
TTTGAATTATGAGTTTATCATGGGAAAAGCTTTGGAGGATGATACTACTA
GTTCTAGTTCTGGTGCTGAATTAGGGAAGAGGGATATTTATGCAAGGCTT
TGTAAGCCTAATTTGTTTGACAATGGAACCAAGGAAATTTGGCTAGATAA
GAGGACTGGTGGGGTTTGTTTGGCAATTTCCTCCAAAGCGTTAAGGATTA
CAGGGATAGATGATCGCAGATATTGGAATCACATTTCAACTGAAGAGTCA
AGGTTCCATACAGTTGCTTATCTTCATCAAATATGGTGGCTTGAAGTGGA
AGGAGATATTGATTTCCAATTTCCAGTAGGGACATACAGCGTGTACTTCA
GACTTCACCTTGGCAGGTCATCCAAGAAGCTTGGACGACGAGTTTGCAAG
ACCGAGCACATCCATGGCTGGGATATTAAACCTGCAAAGTTTCAGCTGAC
GACTTCTGATGGTCAACGCGCTGTCTCCCATACTCATTTGGATAATCCAG
GGCACTGGATCCTCTACCATGTAGGAAACTTTGTTTCTAAGAATTCTAAT
GATTTGATGAAGGTCAAGTTTTCATTGTCTCAAATAGATTGCACTCATAC
AAAGGGTGGTCTGTGTGTTGACTCTGTGCTTATATGCAATAGTAGCAATG
TAAAAAAAGAAGCGTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box domain, cyclin-like
IPR022364	F-box domain, Skp2-like
noIPR	unintegrated

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding